What are 'clumped isotopes'?
Definitions | The 'Clumped isotope' paleothermometer | Reconstructing fluid δ18O | Measuring clumped isotopes | References
Standard stable isotopes, isotopologues and clumped isotopes
Standard isotopes are concerned with "bulk" isotopic composition of a sample (in our case, carbonates), and expressed as a difference (delta, or δ) between the sample and an international standard (mainly VPDB, or "Vienna Peebee Formation Belemnite" for carbonates). Both standard isotopes (δ18O, δ13C) and clumped isotopes (Δ47) are disciplines in the field of stable isotopes (i.e. isotopes that are stable and do not decay). Both methods also mainly deal with measuring isotopes of carbon (mainly 13C and 12C) and oxygen (mainly 18O, 16O, and to a lesser extent, 17O).The main difference between standard isotopes and clumped isotopes resides in what is measured.
The result is expressed in permil, or ‰, and reflects how far the 18O/16O ratio of the sample is from the 18O/16O ratio of the standard. Standard stable isotopes do not, however, tell us anything about how the various isotopes are organised within the lattice of the carbonate crystal.
The relatively new field of clumped isotopes goes one step further and is concerned with how the various isotopes of carbon and oxygen are distributed in the lattice of the carbonate crystal. In other words, clumped isotopes are concerned with distinguishing "isotopologues", i.e. molecules of similar chemical composition but different isotopic composition. The table on the left, from Eiler (2007), illustrates the various isotopologues of N2, O2 and CO2.
When carbonates are reacted with othophosphoric acid, they produce a CO2 gas in isotopic equilibrium (but with a constant offset linked to acid temperature) with the original carbonate. The field of clumped isotopes is concerned with measuring an isotopologue of CO2 gas with a mass of 47, i.e. where the two "heavy" rare isotopes (13C and 18O) are substituted in the CO2 molecule. This is representative of the amount of "clumping" of the heavy isotopes in the crystal lattice of the carbonate measure.
Thermodynamics dictate that the clumping of heavy isotopes is favorable for the stability of a given molecule, i.e. the zero energy point of a molecule with heavy isotopes substituted in the molecule is lower than for a standard molecule (see Figure on the right, example with hydrogene, HD, and deuterium, Eiler 2007).
The 'clumped isotope' paleothermometer
The significance of measuring Δ47 resides in the fact that the amount of clumping at a known temperature can be determined thanks to the laws of thermodynamics alluded to in the previous section. The ordering of isotopes within a crystal structure (or preferential clumping of heavy isotopes at low temperature) will be counter-balanced by the effects of entropy: this implies that as temperature increases, clumping must decrease and eventually reach a purely stochastic distribution at high temperature (i.e. > 1000˚C).
Gosh et al. (2006) were first to demonstrate that this theoretical assumption holds through for actual carbonates by calibrating Δ47 for a range of different carbonates ranging from controlled precipitation experiments to various biological material (see figure 2, left, from Eiler et al., 2007). Initial results suggested that a single calibration line could be derived for all carbonate phases: in other words, clumped isotopes were thought free of any "vital effects" or mineral-specific fractionation effects that plague standard δ18O measurements.
Guo et al. (2009) subsequently provided a theoretical calibration for a number of different mineralogies, taking into account acid fractionation factors for any given temperatures.The initial assumption of a relatively "simple" calibration line still holds true for most of the existing carbonate species, making clumped isotopes one of the most promising paleothermometer for paleoclimate and diagenesis (see e.g., Eagle et al., 2011, Tripati et al., 2011). However, recent work has shown that disequilibrium exists for some specific carbonate species. For instance, speleothemes (cave deposits) display disequilibrium, i.e. their Δ47 is not reflecting cave temperatures (Affek et al., 2008, Däron et al., 2011). Furthermore, some species of deep-sea corals and mollusks have shown disequilibrium interpreted as vital effects (Thiagarajan et al., 2011, Zaarur et al., 2011). Clearly, clumped isotope research has entered an exciting new era where our understanding of the fundamental processes leading to clumping of heavy isotopes in carbonates will increase through new and improved calibration and fundamental work.
Reconstructing fluid δ18O: the flip side of the 'clumped isotope' coin
Traditional stable isotopes (δ18O) in carbonates have been used for decades as a paleothermometer, and/or to fingerprint geological processes. This is because δ18O in carbonates is a function of both temperature of precipitation and fluid composition (see figure on the right, where isobaric lines of equal δ18O in carbonate exist for a range of precipitation temperature and fluid composition). This dual dependency of temperature and fluid composition has plagued δ18O for decades, as to estimate one of the two parameters one needs to know the other (which is almost never the case for geological records, or very rarely the case). Clumped isotope is a gas source stable isotope application, meaning that δ18O and δ13C are measured simultaneously to Δ47 in the same sample. Because Δ47 is independent of fluid δ18O compositon and thus only reflects temperature, both the δ18O composition of the fluid can be reconstructed using clumped isotope. This is a major breakthrough as it allows the estimate of fluid oxygen isotope composition even in the absence of fluid inclusions or other independent temperature estimates. This in turns allows for unambiguous fingerprinting of processes such as diagenetic transformation and paleoenvironmental changes. Some examples of published applications making use of the ability to reconstruct fluid δ18O include reconstructing changes in strength of the Asian monsoon (Suarez, 2011), reconstructing the history of cementation (Dennis and Schrag, 2010, Huntington, 2011), and reconstruction of paleo-elevation (Ghosh et al., 2006b).
Publications resulting from our work on clumped isotopes:
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Hajar A.Al-Wazzan, Nicolas Hawie, Cédric M.John, 2022, Predicting marine organic-rich deposits using forward stratigraphic modelling: The Jurassic Najmah source rock – Case study, Marine and Petroleum Geology, Volume 140, June 2022, 105581, https://doi.org/10.1016/j.marpetgeo.2022.105581
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Sze Ling Ho, Jia-Kang Wang, Yu-Jou Lin, Ching-Ren Lin, Chen-Wei Lee, Chia-Hsin Hsu, Lo-Yu Chang, To-Hsiang Wu, Chien-Chia Tseng, Hsiao-Jou Wu, Cédric M. John, Tatsuo Oji, Tsung-Kwei Liu, Wen-Shan Chen, Peter Li, Jiann-Neng Fang & Jih-Pai Lin , 2022, Changing surface ocean circulation caused the local demise of echinoid Scaphechinus mirabilis in Taiwan during the Pleistocene–Holocene transition, Scientific Reports volume 12, Article number: 8204
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Gaetano Garfi, Cédric M.John, Maja Rücker, Qingyang Lind, Catherine Spurine, Steffen Berg, Samuel Krevor, 2022, Determination of the spatial distribution of wetting in the pore networks of rocks, Journal of Colloid and Interface Science, Volume 613, May 2022, Pages 786-795, https://doi.org/10.1016/j.jcis.2021.12.183
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Alexandra S. Robinson; Annabel Dale; Thierry Adatte; Cédric M. John, 2022, Cenozoic sediment bypass versus Laramide exhumation and erosion of the Eagle Ford Group: Perspective from modelling of organic and inorganic proxy data (Maverick Basin, Texas, USA), Geology, https://doi.org/10.1130/G49886.1
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XIAOLONG SUN,† JUAN ALCALDE , ENRIQUE GOMEZ-RIVAS , DANIEL MU~NOZ-LOPEZ , DAVID CRUSET , , IRENE CANTARERO JUAN DIEGO MARTIN-MARTIN†,CEDRIC M. JOHN§, ANNA TRAVE, 2022, Origin and distribution of calcite cements in a folded fluvial succession: The Puig-reig anticline (south-eastern Pyrenees), Sedimentology, doi: 10.1111/sed.12994
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Marta Marchegiano,Cédric M. John, 2022, Disentangling the Impact of Global and Regional Climate Changes During the Middle Eocene in the Hampshire Basin: New Insights From Carbonate Clumped Isotopes and Ostracod Assemblages, Paleoceanography and Paleoclimate, https://doi.org/10.1029/2021PA004299
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David Cruset, Jaume Vergés, Antonio Benedict, Enrique Gomez‐Rivas, Irene Cantarero, Cédric M. John, Anna Travé, 2021, Multiple fluid flow events from salt‐related rifting to basin inversion (Upper Pedraforca thrust sheet, SE Pyrenees, Basin Research, Volume 33, Issue 6, Nov 2021, p. 3102 - 3136,DOI: https://doi.org/10.1111/bre.12596
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Davies, A., Davis, S., John, C.M., 2021, Evidence of taxonomic non-equilibrium effects in the clumped isotope composition of modern cephalopod carbonate, Chemical Geology, V. 578, https://doi.org/10.1016/j.chemgeo.2021.120317
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Bernasconi, S.M., Daëron, M., Bergmann, K.D., Bonifacie, M., Meckler, A.N., Affek, H.P., Anderson, N., Bajnai, D., Barkan, E., Beverly, E., Blamart, D., Burgener, L., Calmels, D., Chaduteau, C., Clog, M., Davidheiser‐Kroll, B., Davies, A., Dux, D., Eiler, J., Elliott, B., Fetrow, A.C., Fiebig, J., Goldberg, S., Hermoso, M., Huntington, K.W., Hyland, E., Ingalls, M., Jaggi, M., John, C.M., Jost, A.B., Katz, S., Kelson, J., Kluge, T., Kocken, I.J., Laskar, A., Leutert, T.J., Liang, D., Lucarelli, J., Mackey, T.J., Mangenot, X., Meinicke, N., Modestou, S.E., Müller, I.A., Murray, S., Neary, A., Packard,A., Passey, B.H., Pelletier, E., Petersen, S., Piasecki, A., Schauer, A., Snell, K.E., Koenraad, P., Swart, P., Tripati, A., Upadhyay,D., Vennemann, T., Winkelstern, I., Yarian, D., Yoshida, N., Zhang, N., Ziegler, M., 2021, InterCarb: A community effort to improve interlaboratory standardization of the carbonate clumped isotope thermometer using carbonate standards, Geochemistry, Geophysics, Geosystems, V. 22, Issue 5, pp e2020GC009588
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Cai, Cm Li, K., Liu, D., John, C.M., Wang, D, Fu, B., Fakhraee, M., He, H., Feng, L., Jiang, L., 2021, Anaerobic oxydation of methane by Mn in sulfate-poor environments, Geology, V. 49, Issue 7, pp 761-766
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Herlambang, A., John, C.M., 2021, Combining clumped isotope and trace element analysis to constrain potential kinetic effects in calcite, Geochimica et Cosmochimica Acta, V. 296, pp 117-130 (https://doi.org/10.1016/j.gca.2020.12.024)
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John, C.M., Kussanov, I., Hawie, N., 2021, Constraining stratal architecture and pressure barriers in the subsalt Karachaganak Carboniferous carbonate platforms using forward stratigraphic modelling, Marine and Petroleum Geology, V. 124, 104771 (https://doi.org/10.1016/j.marpetgeo.2020.104771)
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Muñoz-López, D., Alías, G., Cruset, D., Cantarero, I., John, C. M., and Travé, A., 2020, Influence of basement rocks on fluid evolution during multiphase deformation: the example of the Estamariu thrust in the Pyrenean Axial Zone, Solid Earth, 11, 2257–2281, https://doi.org/10.5194/se-11-2257-2020, 2020.
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Muñoz-López,D. ,Cruset, D., Cantarero, I., Benedicto,A., John, C.M., Travé, A., 2020, Fluid Dynamics in a Thrust Fault Inferred from Petrology and Geochemistry of Calcite Veins: An Example from the Southern Pyrenees, Geofluids, Volume 2020, Article ID 8815729 (https://doi.org/10.1155/2020/8815729)
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Tagliavento, M., John, C.M., Anderskouv, K., Stemmerik, L., 2020, Towards a new understanding of the genesis of chalk: Diagenetic origin of micarbs confirmed by clumped isotope analysis, Sedimentology (https://doi.org/10.1111/sed.12802)
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Beaudoin, N.E., Labeur, A., Lacombe,O., Koehn, D., Billi, A., Hoareau,G., Boyce,A., John,C.M., Marchegiano,M.,Roberts,N.K., Millar, I.N., Claverie,F., Pecheyran, C., Callot,J.-P., 2020, Regional-scale paleofluid system across the Tuscan Nappe–Umbria–Marche Apennine Ridge (northern Apennines) as revealed by mesostructural and isotopic analyses of stylolite–vein networks, Solid Earth, 11, 1617–1641, (https://doi.org/10.5194/se-11-1617-2020)
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Cruset, D., Cantarero. I., Benedicto, A., John, C.M., Vergés, J.,Albert, R., Gerdes, Travé, A.,, Data in Brief, vol 31, August 2020, 105896, (available online, https://doi.org/10.1016/j.dib.2020.105896)
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Cruset, D., Cantarero, I., Benedicto,A., John, C.M., Verges, J.,Albert, R., Gerdes, A.,Travé, A., 2020, From hydroplastic to brittle deformation: Controls on fluid flow in fold and thrust belts. Insights from the Lower Pedraforca thrust sheet (SE Pyrenees), Marine and Petroleum Geology, Vol 120 (https://doi.org/10.1016/j.marpetgeo.2020.104517)
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Cruset, D., Ibanez-Insa, J., Cantarero, I., John, C.M., Travé, A.,Significance of fracture-filling rose-like calcite crystal clusters in the SE Pyrenees, Minerals, 10(6), 522, (available online, https://doi.org/10.3390/min10060522)
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Effects of oxygen plasma ashing treatment on carbonate clumped isotopes, Rapid Communications in Mass Spectrometry, DOI: https://doi.org/10.1002/rcm.8802
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Early dolomitization and partial burial recrystallization: a case study of Middle Triassic peritidal dolomites in the Villany Hills (SW hungary) using petrography, carbon, oxygen, strontium and clumped isotope data, International Journal of Earth Sciences, 109, 1051-1070, 2020,https://doi.org/10.1007/s00531-020-01851-7)
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Tropical temperature in the Maastrichitian Danish Basin: Data from coccolith Δ47 and δ18O, Geology (2019),(https://doi.org/10.1130/G46671.1)
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Clumped-isotope paleothermometry and LA-ICP-MS U-Pb dating of lava-pile hydrothermal calcite veins, Contributions to Mineralogy and Petrology, 174:63,(https://doi.org/10.1007/s00410-019-1599-x)
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Effects of Improved 17O correction on inter-laboratory agreement in clumped isotope calibrations, estimates of mineral specific offsets, and temperature dependence of acid digestion fractionation, Geochemistry, Geophysics, Geosystems, (available online at https://doi.org/10.1029/2018GC008127)
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Rock-buffered recrystallization of Marion Plateau dolomites at low temperature evidenced by clumped isotope thermometry and X-Ray diffraction analysis, Geochimica et Cosmochimica Acta (available online, https://doi.org/10.1016/j.gca.2019.02.012)
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Nardini, N., Muñoz-López, D., Cruset, D., Cantarero, I., Martín-Martín,J.D., Benedicto, A., Gomez-Rivas, E., John, C.M., Travé, A.,From Early Contraction to Post-Folding Fluid Evolution in the Frontal Part of the Bóixols Thrust Sheet (Southern Pyrenees) as Revealed by the Texture and Geochemistry of Calcite Cements, Minerals, 9(2), 117, (available online, https://doi.org/10.3390/min9020117)
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The clumped (13C-18O) isotope composition of echinoid calcite: further evidence for "vital effects" in the clumped isotope proxy, Geochimica et Cosmochimica Acta (available online, https://doi.org/10.1016/j.gca.2018.07.038)
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Multi-phase dolomitization and recrystallization of Middle Triassic shallow marine-peritidal carbonates from the Mecsek Mts. (SW Hungary), as inferred from petrography, carbon, oxygen, strontium and clumped isotope data, Marine and Petroleum Geology (available online, https://doi.org/10.1016/j.marpetgeo.2018.12.004)
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Assessment of factors controlling clumped isotope and δ18O values of hydrothermal vent calcites, Geochemistry, Gephysics, Geosystems (available online, doi:10.1029/2017GC006969)
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Evolution of hot fluids in the Chingshui geothermal field inferred from crystal morphology and geochemical vein data, Geothermics (DOI 10.1016/j.geothermics.2017.11.016)
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Control on the formation of stratabound dolostone bodies, Hammam Faraun Fault block, Gulf of Suez, Sedimentology (available online, doi:10.1111/sed.12454)
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A new approach to geobarometry by combining fluid inclusion and clumped isotope thermometry in hydrothermal carbonates, Terra Nova (DOI 10.1111/ter.12326)
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Testing clumped isotopes as a reservoir characterization tool: a comparison with fluid inclusions in a dolomitized sedimentary carbonate reservoir buried to 2-4 km, Geological Society, London, Special Publications 468, SP468. 7
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Changes in fluid regime in syn-orogenic sediments during the growth of the South Pyrenean fold and thrust belt, Global and Planetary Change (doi.org/10.1016/j.gloplacha.2017.11.001)
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Reducing contamination parameters for clumped isotope analysis: The effect of lowering Porapak Q trap temperature to below -50˚C, Rapid Communication in Mass Spectrometry (doi.org/10.1002/rcm.7902)
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Magmatic-like fluid source of the Chingshui geothermal field, NE Taiwan evidenced by carbonate clumped-isotope paleothermometry, Journal of Asian Earth Sciences, in press (doi:dx.doi.org/10.1016/j.jseaes.2017.03.004)
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Assessing and calibrating the ATR-FTIR approach as a carbonate rocks characterization tool, Sedimentary Geology, Volume 347, 1 January 2017, Pages 36–52 (doi:10.1016/j.sedgeo.2016.07.003)
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Clumped-isotope thermometry of magnesium carbonates in ultramafic rocks, Geochimica et Cosmochimica Acta, Volume 193, pp 222-250 (doi:10.1016/j.gca.2016.08.003)
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Exploring the potential of clumped isotope thermometry on coccolith-rich sediments as a sea surface temperature proxy, Geochemistry, Geophysics, Geosystems, (available online, doi:10.1002/2016GC006459)
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Community software for challenging isotope analysis: First applications of 'Eastope' to clumped isotopes, Rapid Commun. Mass Spectrom., Volume 30, pp 2285-2300 (available online, doi:10.1002/rcm.7720)
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Paired stable isotopes (O, C) and clumped isotope thermometry of magnesite and silica veins in the New Caledonia Peridotite Nappe, Geochimica et Cosmochimica Acta, Volume 183, pp 234-249 (available online, doi:10.1016/j.gca.2016.03.021)
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Crestal graben fluid evolution during growth of the Puig-reig anticline (South Pyrenean fold and thrust belt), Journal of Geodynamics (available online, doi:10.1016/j.jog.2016.05.004)
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Application of redox sensitive proxies and carbonate clumped isotopes to Mesozoic and Paleozoic radiaxial fibrous cements,Chemical Geology, Volume 417, 6 December 2015, Pages 306–321 (available online, doi:10.1016/j.chemgeo.2015.10.008)
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Burial estimates constrained by clumped isotope paleothermometry: example of the Lower Cretaceous Qishn Formation (Haushi-Huqf High, Oman), In: Armitage, P. J., Butcher, A. R., Churchill, J. M., Csoma, A. E., Hollis, C., Lander, R. H., Omma, J. E. & Worden, R. H. (eds) Reservoir Quality of Clastic and Carbonate Rocks: Analysis, Modelling and Prediction. Geological Society, London, Special Publications, 435, http://doi.org/10.1144/SP435.5
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Temperature dependence of oxygen- and clumped isotope fractionation in carbonates: a study of travertines and tufas in the 6-95˚C temperature range, Geochimica et Cosmochimica Acta. Volume 168, pages 172-192 (available online, doi:10.1016/j.gca.2015.06.032)
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Diagenesis of phosphatic hardgrounds in the Monterey Formation: A perspective from bulk and clumped isotope geochemistry, GSA Bulletin, v. 127, no. 9-10, p. 1453-1463, doi:10.1130/B31160.1
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A simple method for vaterite precipitation for isotopic studies: implications for bulk and clumped isotope analysis, Biogeosciences (doi:10.5194/bg-12-3289-2015), volume 12, pp 3289-3299
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Effects of brine chemistry and polymorphism on clumped isotopes revealed by laboratory precipitation of mono- and multiphase calcium carbonates, Geochimica et Cosmochimica Acta, volume 160, pp 155-168, doi:10.1016/j.gca.2015.03.031
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Laboratory calibration of the calcium carbonate clumped isotope thermometer in the 25-250˚C temperature range, Geochmimica et Cosmochimica Acta (available online), doi:10.1016/j.gca.2015.02.028
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The magnesium isotope (δ26Mg) signature of dolomites, Geochmimica et Cosmochimica Acta 149 (2015), pp 131-151. doi:10.1016/j.gca.2014.11.003
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Dimensions, texture-distribution, and geochemical heterogeneities of fracture-related dolomite geobodies hosted in Ediacarian limestones, northern Oman. AAPG Bulletin, v. 98, no. 9 (September 2014), pp. 1789–1809 (Journal article)
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Dolomitization of Lower Cretaceous peritidal cabonates by modified seawater: constraints from clumped isotope paleothermometry, elemental chemistry and strontium isotopes. JOURNAL OF SEDIMENTARY RESEARCH 84(7):552-566 01 Jul 2014
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Time-capsule concretions: Unlocking burial diagenetic processes in the Mancos Shale using carbonate clumped isotopes. EARTH AND PLANETARY SCIENCE LETTERS394:30-37 15 May 2014 (Journal article) Author URL
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